Index

_

_captum_deep_lift_shap() (in module tangermeme.deep_lift_shap)

_cast_as_tensor() (in module tangermeme.utils) _validate_input() (in module tangermeme.utils)

A

ablate() (in module tangermeme.ablate) ablate_annotations() (in module tangermeme.ablate)

annotate_seqlets() (in module tangermeme.annotate) apply_product() (in module tangermeme.product)

C

characters() (in module tangermeme.utils)

chunk() (in module tangermeme.utils) count_annotations() (in module tangermeme.annotate)

D

deep_lift_shap() (in module tangermeme.deep_lift_shap)

delete() (in module tangermeme.ersatz) dinucleotide_shuffle() (in module tangermeme.ersatz)

E

example_to_fasta_coords() (in module tangermeme.utils) extract_loci() (in module tangermeme.io)

extract_matching_loci() (in module tangermeme.match) extract_signal() (in module tangermeme.utils)

G

greedy_substitution() (in module tangermeme.design)

H

hypothetical_attributions() (in module tangermeme.deep_lift_shap)

I

insert() (in module tangermeme.ersatz)

M

marginalize() (in module tangermeme.marginalize) marginalize_annotations() (in module tangermeme.marginalize) module tangermeme.ablate tangermeme.annotate tangermeme.deep_lift_shap tangermeme.design tangermeme.ersatz tangermeme.io tangermeme.marginalize tangermeme.match tangermeme.plot tangermeme.predict tangermeme.product tangermeme.seqlet tangermeme.space tangermeme.utils tangermeme.variant_effect

multisubstitute() (in module tangermeme.ersatz)

O

one_hot_encode() (in module tangermeme.utils)

P

pairwise_annotations() (in module tangermeme.annotate) pairwise_annotations_spacing() (in module tangermeme.annotate)

plot_logo() (in module tangermeme.plot) predict() (in module tangermeme.predict) pwm_consensus() (in module tangermeme.utils)

R

random_one_hot() (in module tangermeme.utils) randomize() (in module tangermeme.ersatz) read_meme() (in module tangermeme.io)

read_vcf() (in module tangermeme.io) recursive_seqlets() (in module tangermeme.seqlet) reverse_complement() (in module tangermeme.utils)

S

shuffle() (in module tangermeme.ersatz)

space() (in module tangermeme.space) substitute() (in module tangermeme.ersatz)

T

tangermeme.ablate module tangermeme.annotate module tangermeme.deep_lift_shap module tangermeme.design module tangermeme.ersatz module tangermeme.io module tangermeme.marginalize module tangermeme.match module

tangermeme.plot module tangermeme.predict module tangermeme.product module tangermeme.seqlet module tangermeme.space module tangermeme.utils module tangermeme.variant_effect module tfmodisco_seqlets() (in module tangermeme.seqlet)

U

unchunk() (in module tangermeme.utils)